Artificial Intelligence and Medical Imaging

@article{matthias2024peripros,
  author = {Matthias, Holzbauer and Raher, W and Kobler, Erich and Froschauer, Stefan},
  title = {Periprosthetic Radiolucency in Total Wrist Arthroplasty: A Radiographic Study},
  year = {2024},
  volume = {49},
  number = {9},
  journal = {Journal of Hand Surgery-European Volume}
}

@article{hammernik2017learning,
  author = {Hammernik, Kerstin and Klatzer, Teresa and Kobler, Erich and Recht, Michael P. and Sodickson, Daniel K. and Pock, Thomas and Knoll, Florian},
  title = {Learning a variational network for reconstruction of accelerated MRI data},
  year = {2017},
  volume = {79},
  number = {6},
  journal = {Magnetic Resonance in Medicine}
}

@article{knoll2018assessme,
  author = {Knoll, Florian and Hammernik, Kerstin and Kobler, Erich and Pock, Thomas and Recht, Michael P. and Sodickson, Daniel K.},
  title = {Assessment of the generalization of learned image reconstruction and the potential for transfer learning},
  year = {2018},
  volume = {81},
  number = {1},
  journal = {Magnetic Resonance in Medicine}
}

@inproceedings{kobler2017variatio,
  author = {Kobler, Erich and Klatzer, Teresa and Hammernik, Kerstin and Pock, Thomas},
  title = {Variational networks: Connecting variational methods and deep learning},
  year = {2017},
  booktitle = {Pattern Recognition - 39th German Conference, GCPR 2017, Proceedings}
}

@article{kobler2020totaldee,
  author = {Kobler, Erich and Effland, Alexander and Kunisch, Karl and Pock, Thomas},
  title = {Total deep variation for linear inverse problems},
  year = {2020},
  journal = {Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition}
}

@article{kobler2022totaldee,
  author = {Kobler, Erich and Effland, Alexander and Kunisch, Karl and Pock, Thomas},
  title = {Total Deep Variation: A Stable Regularization Method for Inverse Problems},
  year = {2022},
  volume = {44},
  number = {12},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence}
}

@article{narnhofer2022bayesian,
  author = {Narnhofer, Dominik and Effland, Alexander and Kobler, Erich and Hammernik, Kerstin and Knoll, Florian and Pock, Thomas},
  title = {Bayesian Uncertainty Estimation of Learned Variational MRI Reconstruction},
  year = {2022},
  volume = {41},
  number = {2},
  journal = {IEEE Transactions on Medical Imaging}
}

@article{effland2020variatio,
  author = {Effland, Alexander and Kobler, Erich and Kunisch, Karl and Pock, Thomas},
  title = {Variational Networks: An Optimal Control Approach to Early Stopping Variational Methods for Image Restoration},
  year = {2020},
  volume = {62},
  number = {3},
  journal = {Journal of Mathematical Imaging and Vision}
}

@article{kaye2020accelera,
  author = {Kaye, Elena A. and Aherne, Emily A. and Duzgol, Cihan and Häggström, Ida and Kobler, Erich and Mazaheri, Yousef and Fung, Maggie M. and Zhang, Zhigang and Otazo, Ricardo and Vargas, Hebert A. and Akin, Oguz},
  title = {Accelerating prostate diffusion-weighted MRI using a guided denoising convolutional neural network: Retrospective feasibility study},
  year = {2020},
  volume = {2},
  number = {5},
  journal = {Radiology: Artificial Intelligence}
}

@article{haase2023reductio,
  author = {Haase, Robert and Pinetz, Thomas and Bendella, Zeynep and Kobler, Erich and Paech, Daniel and Block, Wolfgang and Effland, Alexander and Radbruch, Alexander and Deike-Hofmann, Katerina},
  title = {Reduction of Gadolinium-Based Contrast Agents in MRI Using Convolutional Neural Networks and Different Input Protocols: Limited Interchangeability of Synthesized Sequences with Original Full-Dose Images Despite Excellent Quantitative Performance},
  year = {2023},
  volume = {58},
  number = {6},
  journal = {Investigative Radiology}
}

@article{rastogi2024deeplear,
  author = {Rastogi, Aditya and Brugnara, Gianluca and Foltyn-Dumitru, Martha and Mahmutoglu, Mustafa Ahmed and Preetha, Chandrakanth J. and Kobler, Erich and Pflüger, Irada and Schell, Marianne and Deike-Hofmann, Katerina and Kessler, Tobias and van den Bent, Martin J. and Idbaih, Ahmed and Platten, Michael and Brandes, Alba A. and Nabors, Burt and Stupp, Roger and Bernhardt, Denise and Debus, Jürgen and Abdollahi, Amir and Gorlia, Thierry and Tonn, Jörg Christian and Weller, Michael and Maier-Hein, Klaus H. and Radbruch, Alexander and Wick, Wolfgang and Bendszus, Martin and Meredig, Hagen and Kurz, Felix T. and Vollmuth, Philipp},
  title = {Deep-learning-based reconstruction of undersampled MRI to reduce scan times: a multicentre, retrospective, cohort study},
  year = {2024},
  volume = {25},
  number = {3},
  journal = {The Lancet Oncology}
}

@article{cascarano2023constrai,
  author = {Cascarano, Pasquale and Franchini, Giorgia and Kobler, Erich and Porta, Federica and Sebastiani, Andrea},
  title = {Constrained and unconstrained deep image prior optimization models with automatic regularization},
  year = {2023},
  volume = {84},
  number = {1},
  journal = {Computational Optimization and Applications}
}

@article{haase2023artifici,
  author = {Haase, Robert and Pinetz, Thomas and Kobler, Erich and Paech, Daniel and Effland, Alexander and Radbruch, Alexander and Deike-Hofmann, Katerina},
  title = {Artificial Contrast: Deep Learning for Reducing Gadolinium-Based Contrast Agents in Neuroradiology},
  year = {2023},
  volume = {58},
  number = {8},
  journal = {Investigative Radiology}
}

@inproceedings{kobler2018variatio,
  author = {Kobler, Erich and Muckley, Matthew and Chen, Baiyu and Knoll, Florian and Hammernik, Kerstin and Pock, Thomas and Sodickson, Daniel and Otazo, Ricardo},
  title = {Variational Deep Learning for Low-Dose Computed Tomography},
  year = {2018},
  booktitle = {2018 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2018 - Proceedings}
}

@misc{zach2022computed,
  author = {Zach, Martin and Kobler, Erich and Pock, Thomas},
  title = {Computed Tomography Reconstruction using Generative Energy-Based Priors},
  year = {2022},
}

@article{chen2019sparsect,
  author = {Chen, Baiyu and Kobler, Erich and Muckley, Matthew J. and Sodickson, Aaron D. and O'Donnell, Thomas and Flohr, Thomas and Schmidt, Bernhard and Sodickson, Daniel K. and Otazo, Ricardo},
  title = {SparseCT: System concept and design of multislit collimators},
  year = {2019},
  volume = {46},
  number = {6},
  journal = {Medical Physics}
}

@article{effland2021imagemor,
  author = {Effland, Alexander and Kobler, Erich and Pock, Thomas and Rajković, Marko and Rumpf, Martin},
  title = {Image Morphing in Deep Feature Spaces: Theory and Applications},
  year = {2021},
  volume = {63},
  number = {2},
  journal = {Journal of Mathematical Imaging and Vision}
}

@article{effland2019jointrec,
  author = {Effland, Alexander and Kobler, Erich and Brandenburg, Anne and Klatzer, Teresa and Neuhäuser, Leonie and Hölzel, Michael and Landsberg, Jennifer and Pock, Thomas and Rumpf, Martin},
  title = {Joint reconstruction and classification of tumor cells and cell interactions in melanoma tissue sections with synthesized training data},
  year = {2019},
  volume = {14},
  number = {4},
  journal = {International Journal of Computer Assisted Radiology and Surgery}
}

@inproceedings{johnson2019jointmul,
  author = {Johnson, Patricia M. and Muckley, Matthew J. and Bruno, Mary and Kobler, Erich and Hammernik, Kerstin and Pock, Thomas and Knoll, Florian},
  title = {Joint Multi-anatomy Training of a Variational Network for Reconstruction of Accelerated Magnetic Resonance Image Acquisitions},
  year = {2019},
  booktitle = {Machine Learning for Medical Image Reconstruction}
}

@inproceedings{alshenoudy2023semisupe,
  author = {Alshenoudy, Ahmed and Sabrowsky-Hirsch, Bertram and Thumfart, Stefan and Giretzlehner, Michael and Kobler, Erich},
  title = {Semi-supervised Brain Tumor Segmentation Using Diffusion Models},
  year = {2023},
  booktitle = {Artificial Intelligence Applications and Innovations}
}

@article{pinetz2021sharedpr,
  author = {Pinetz, Thomas and Kobler, Erich and Pock, Thomas and Effland, Alexander},
  title = {Shared Prior Learning of Energy-Based Models for Image Reconstruction},
  year = {2021},
  volume = {14},
  number = {4},
  journal = {SIAM Journal on Imaging Sciences}
}

@inproceedings{pinetz2023faithful,
  author = {Pinetz, Thomas and Kobler, Erich and Haase, Robert and Deike-Hofmann, Katerina and Radbruch, Alexander and Effland, Alexander},
  title = {Faithful Synthesis of Low-Dose Contrast-Enhanced Brain MRI Scans Using Noise-Preserving Conditional GANs},
  year = {2023},
  booktitle = {Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 - 26th International Conference, Proceedings}
}

@inproceedings{zach2023explicit,
  author = {Zach, Martin and Pock, Thomas and Kobler, Erich and Chambolle, Antonin},
  title = {Explicit Diffusion of Gaussian Mixture Model Based Image Priors},
  year = {2023},
  booktitle = {Scale Space and Variational Methods in Computer Vision - 9th International Conference, SSVM 2023, Proceedings}
}

@inproceedings{lindner2023lightwei,
  author = {Lindner, Lydia and Effland, Alexander and Ilic, Filip and Pock, Thomas and Kobler, Erich},
  title = {Lightweight Video Denoising using Aggregated Shifted Window Attention},
  year = {2023},
  booktitle = {2023 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV)}
}

@article{bogensperger2022ajointal,
  author = {Bogensperger, Lea and Kobler, Erich and Pernitsch, Dominique and Kotzbeck, Petra and Pieber, Thomas R. and Pock, Thomas and Kolb, Dagmar},
  title = {A joint alignment and reconstruction algorithm for electron tomography to visualize in-depth cell-to-cell interactions},
  year = {2022},
  volume = {157},
  number = {6},
  journal = {Histochemistry and Cell Biology}
}

@misc{pinetz2024gadolini,
  author = {Pinetz, Thomas and Kobler, Erich and Haase, Robert and Luetkens, Julian A. and Meetschen, Mathias and Haubold, Johannes and Deuschl, Cornelius and Radbruch, Alexander and Deike, Katerina and Effland, Alexander},
  title = {Gadolinium dose reduction for brain MRI using conditional deep learning},
  year = {2024},
}

@article{haase2025artifici,
  author = {Haase, Robert and Pinetz, Thomas and Kobler, Erich and Bendella, Zeynep and Gronemann, Christian and Paech, Daniel and Radbruch, Alexander and Effland, Alexander and Deike, Katerina},
  title = {Artificial T1-Weighted Postcontrast Brain MRI A Deep Learning Method for Contrast Signal Extraction},
  year = {2025},
  volume = {60},
  number = {2},
  journal = {Investigative Radiology}
}

@article{haase2025metastas,
  author = {Haase, Robert and Pinetz, Thomas and Kobler, Erich and Bendella, Zeynep and Paech, Daniel and Clauberg, Ralf and Foltyn-Dumitru, Martha and Wagner, Verena and Schlamp, Kai and Heussel, Gudula and Heussel, Claus Peter and Vahlensieck, Martin and Luetkens, Julian A. and Schlemmer, Heinz Peter and Specht-Riemenschneider, Louisa and Radbruch, Alexander and Effland, Alexander and Deike, Katerina},
  title = {Metastasis Detection Using True and Artificial T1-Weighted Postcontrast Images in Brain MRI},
  year = {2025},
  volume = {60},
  number = {5},
  journal = {Investigative Radiology}
}

@article{ortizgonzalez2024opticalf,
  author = {Ortiz-Gonzalez, Antonio and Kobler, Erich and Simon, Stefan and Bischoff, Leon and Nowak, Sebastian and Isaak, Alexander and Block, Wolfgang and Sprinkart, Alois M. and Attenberger, Ulrike and Luetkens, Julian A. and Bayro-Corrochano, Eduardo and Effland, Alexander},
  title = {Optical Flow-Guided Cine MRI Segmentation With Learned Corrections},
  year = {2024},
  volume = {43},
  number = {3},
  journal = {IEEE Transactions on Medical Imaging}
}

@article{zach2024producto,
  author = {Zach, Martin and Kobler, Erich and Chambolle, Antonin and Pock, Thomas},
  title = {Product of Gaussian Mixture Diffusion Models},
  year = {2024},
  volume = {66},
  number = {4},
  journal = {Journal of Mathematical Imaging and Vision}
}

@article{cascarano2024avariabl,
  author = {Cascarano, Pasquale and Franchini, Giorgia and Kobler, Erich and Porta, Federica and Sebastiani, Andrea},
  title = {A variable metric proximal stochastic gradient method: An application to classification problems},
  year = {2024},
  volume = {12},
  journal = {EURO Journal on Computational Optimization}
}

@inproceedings{effland2019timedisc,
  author = {Effland, Alexander and Kobler, Erich and Pock, Thomas and Rumpf, Martin},
  title = {Time Discrete Geodesics in Deep Feature Spaces for Image Morphing},
  year = {2019},
  booktitle = {Scale Space and Variational Methods in Computer Vision - 7th International Conference, SSVM 2019, Proceedings}
}

@inproceedings{effland2018variatio,
  author = {Effland, Alexander and Hölzel, Michael and Klatzer, Teresa and Kobler, Erich and Landsberg, Jennifer and Neuhäuser, Leonie and Pock, Thomas and Rumpf, Martin},
  title = {Variational networks for joint image reconstruction and classification of tumor immune cell interactions in melanoma tissue sections},
  year = {2018},
  booktitle = {Bildverarbeitung für die Medizin 2018 Algorithmen - Systeme - Anwendungen}
}

@inproceedings{klatzer2017trainabl,
  author = {Klatzer, Teresa and Soukup, Daniel and Kobler, Erich and Hammernik, Kerstin and Pock, Thomas},
  title = {Trainable regularization for multi-frame superresolution},
  year = {2017},
  booktitle = {Pattern Recognition - 39th German Conference, GCPR 2017, Proceedings}
}

@misc{kobler2023learning,
  author = {Kobler, Erich and Pock, Thomas},
  title = {Learning Gradually Non-convex Image Priors Using Score Matching},
  year = {2023},
}

@inproceedings{hofinger2022learnedv,
  author = {Hofinger, Markus and Kobler, Erich and Effland, Alexander and Pock, Thomas},
  title = {Learned Variational Video Color Propagation},
  year = {2022},
  booktitle = {Computer Vision – ECCV 2022 - 17th European Conference, 2022, Proceedings}
}

@inproceedings{pinetz2021totaldee,
  author = {Pinetz, Thomas and Kobler, Erich and Doberstein, Christian and Berkels, Benjamin and Effland, Alexander},
  title = {Total Deep Variation for Noisy Exit Wave Reconstruction in Transmission Electron Microscopy},
  year = {2021},
  booktitle = {Scale Space and Variational Methods in Computer Vision - 8th International Conference, SSVM 2021, Proceedings}
}

@misc{pourya2025dealingw,
  author = {Pourya, Mehrsa and Kobler, Erich and Unser, Michael and Neumayer, Sebastian},
  title = {DEALing with Image Reconstruction: Deep Attentive Least Squares},
  year = {2025},
}

@inproceedings{pinetz2022blindsin,
  author = {Pinetz, Thomas and Kobler, Erich and Pock, Thomas and Effland, Alexander},
  title = {Blind Single Image Super-Resolution via Iterated Shared Prior Learning},
  year = {2022},
  booktitle = {Pattern Recognition - 44th DAGM German Conference, DAGM GCPR 2022, Proceedings}
}

@inproceedings{hammernik2018variatio,
  author = {Hammernik, Kerstin and Kobler, Erich and Pock, Thomas and Recht, Michael P and Sodickson, Daniel K and Knoll, Florian},
  title = {Variational adversarial networks for accelerated MR image reconstruction},
  year = {2018},
  booktitle = {ISMRM-ESMRMB 2018 Abstracts}
}

@inproceedings{hammernik2019dynamicm,
  author = {Hammernik, Kerstin and Schloegl, Matthias and Kobler, Erich and Stollberger, Rudolf and Pock, Thomas},
  title = {Dynamic multicoil reconstruction using variational networks},
  year = {2019},
  booktitle = {ISMRM 2019 Proceedings}
}

@inproceedings{zach2020realworl,
  author = {Zach, Martin and Kobler, Erich},
  title = {Real-world video restoration using noise2noise},
  year = {2020},
  booktitle = {Proceedings of the Joint Austrian Computer Vision and Robotics Workshop 2020}
}

@inproceedings{pinetz2025differen,
  author = {Pinetz, Thomas and Kobler, Erich and Haase, Robert and Luetkens, Julian A. and Meetschen, Mathias and Haubold, Johannes and Deuschl, Cornelius and Radbruch, Alexander and Deike-Homann, Katerina and Effland, Alexander},
  title = {Differential contrast enhancement using conditional deep learning for Gadolinium dose reduction in brain MR},
  year = {2025},
  booktitle = {Medical Imaging with Deep Learning – MIDL 2024 Short Papers}
}

@inproceedings{kobler2020totaldef,
  author = {Kobler, Erich and Chen, Baiyu and Effland, Alexander and Pock, Thomas and Sodickson, Daniel and Otazo, Ricardo},
  title = {Total deep variation for SparseCT reconstruction},
  year = {2020},
  booktitle = {Proceedings of the 6th International Conference on Image Formation in X-Ray Computed Tomography}
}

@inproceedings{knoll2018analysis,
  author = {Knoll, Florian and Hammernik, Kerstin and Kobler, Erich and Pock, Thomas and Sodickson, Daniel K. and Recht, Michael P.},
  title = {Analysis of the influence of deviations between training and test data in learned image reconstruction},
  year = {2018},
  booktitle = {ISMRM Workshop on Machine Learning}
}

@article{haase2024detektio,
  author = {Haase, Robert and Pinetz, Thomas and Kobler, Erich and Bendella, Zeynep and Paech, Daniel and Clauberg, Ralf and Effland, Alexander and Radbruch, Alexander and Deike-Hofmann, Katerina},
  title = {Detektion von Hirnmetastasen auf künstlichen kontrastmittelverstärkten T1-gewichteten MRT-Bildern nach Gabe einer reduzierten Dosis gadoliniumhaltiger Kontrastmittel},
  year = {2024},
  volume = {196},
  journal = {RöFo: Fortschritte auf dem Gebiet der Röntgenstrahlen und der bildgebenden Verfahren}
}

@inproceedings{chen2019effectof,
  author = {Chen, Baiyu and Kobler, Erich and Allmendinger, Thomas and Sodickson, Aaron D. and Sodickson, Daniel K. and Otazo, Ricardo},
  title = {Effect of Multislit Collimator Motion On SparseCT Image Quality for Low-Dose CT Examinations},
  year = {2019},
  booktitle = {Medical Physics – AAPM 61st Annual Meeting & Exhibition Abstract Proceedings}
}

@inproceedings{hansel2024fedpcefe,
  author = {Hansel, Soma and Kobler, Erich and Effland, Alexander},
  title = {FedPCE: Federated Personalized Client Embeddings},
  year = {2024},
  booktitle = {ICLR 2025 – International Conference on Learning Representations (eingereicht über OpenReview)}
}

@misc{brandsttter2025deeplear,
  author = {Brandstötter, Bastian},
  title = {Deep learning for realistic synthesis of 3D contrast-enhanced MRI from non-contrast MRI volumes},
  year = {2025}
}

@inproceedings{skaisgiris2026fromnatu,
  author = {Skaisgiris, Paulis and Pammer, Thomas and Semmelrock, Veronika and Ielanskyi, Mykyta and Heisinger, Maximilian and Kobler, Erich},
  title = {From Natural Language to Exact Cover: A Neuro-Symbolic Approach to Zebra Puzzles},
  year = {2026},
  booktitle = {ICLR 2026 Workshop on Logical Reasoning of Large Language Models}
}

@misc{ma2024efficien,
  author = {Ma, Jun and Li, Feifei and Kim, Sumin and Asakereh, Reza and Le, Bao-Hiep and Nguyen-Vu, Dang-Khoa and Pfefferle, Alexander and Wei, Muxin and Gao, Ruochen and Lyu, Donghang and Yang, Songxiao and Purucker, Lennart and Marinov, Zdravko and Staring, Marius and Lu, Haisheng and Dao, Thuy Thanh and Ye, Xincheng and Li, Zhi and Brugnara, Gianluca and Vollmuth, Philipp and Foltyn-Dumitru, Martha and Cho, Jaeyoung and Mahmutoglu, Mustafa Ahmed and Bendszus, Martin and Pflüger, Irada and Rastogi, Aditya and Ni, Dong and Yang, Xin and Zhou, Guang-Quan and Wang, Kaini and Heller, Nicholas and Papanikolopoulos, Nikolaos and Weight, Christopher and Tong, Yubing and Udupa, Jayaram K. and Patrick, Cahill J. and Wang, Yaqi and Zhang, Yifan and Contijoch, Francisco and McVeigh, Elliot and Ye, Xin and He, Shucheng and Haase, Robert and Pinetz, Thomas and Radbruch, Alexander and Krause, Inga and Kobler, Erich and He, Jian and Tang, Yucheng and Yang, Haichun and Huo, Yuankai and Luo, Gongning and Kushibar, Kaisar and Amankulov, Jandos and Toleshbayev, Dias and Mukhamejan, Amangeldi and Egger, Jan and Pepe, Antonio and Gsaxner, Christina and Luijten, Gijs and Fujita, Shohei and Kikuchi, Tomohiro and Wiestler, Benedikt and Kirschke, Jan S. and de la Rosa, Ezequiel and Bolelli, Federico and Lumetti, Luca and Grana, Costantino and Xie, Kunpeng and Wu, Guomin and Puladi, Behrus and Martín-Isla, Carlos and Lekadir, Karim and Campello, Victor M. and Shao, Wei and Brisbane, Wayne and Jiang, Hongxu and Wei, Hao and Yuan, Wu and Li, Shuangle and Zhou, Yuyin and Wang, Bo},
  title = {Efficient MedSAMs: Segment Anything in Medical Images on Laptop  },
  year = {2024},
}

@misc{freinschlag2026symboleq,
  author = {Freinschlag, Richard and Bertram, Timo and Kobler, Erich and Mayr, Andreas and Klambauer, Günter},
  title = {Symbol-Equivariant Recurrent Reasoning Models},
  year = {2026},
}